PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_FAF2AE9FB.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 320aa    MW: 36696.9 Da    PI: 12.4181
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_FAF2AE9FB.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-152471148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+ Ed  l+d v+++G g+W+++ r+ g+ R++k+c++rw ++l
  Traes_7DL_FAF2AE9FB.1 24 KGPWTQAEDRVLLDHVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHL 71
                           79******************************************9986 PP

2Myb_DNA-binding47.54.2e-1577120146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            +g++++eE+ l+++++ + G++ W++I+ +++ gRt++++k++w++
  Traes_7DL_FAF2AE9FB.1  77 KGPFSPEEERLILRLHGLIGNK-WARISTHLP-GRTDNEVKNFWNT 120
                            79********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0251971IPR017930Myb domain
SuperFamilySSF466895.03E-3021118IPR009057Homeodomain-like
SMARTSM007171.4E-122373IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-222578IPR009057Homeodomain-like
CDDcd001675.54E-112671No hitNo description
PfamPF139211.4E-142786No hitNo description
PROSITE patternPS0017503948IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.672126IPR017930Myb domain
SMARTSM007172.8E-1576124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2479125IPR009057Homeodomain-like
CDDcd001675.65E-1179122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MATAMDTTVP RSGLGEGGGG GLKKGPWTQA EDRVLLDHVR RHGEGNWNAV RRETGLQRCG  60
KSCRLRWANH LRPNLRKGPF SPEEERLILR LHGLIGNKWA RISTHLPGRT DNEVKNFWNT  120
RLKRRQRAGQ SLYPPDVERE IAFMRAQNIN PFADADGNTA ASPFSDPFAL PPRPPSSTKP  180
ASHSHSSPLI NQHYPLLNEM QGMQMRHHAV QHAHPQPAFH HHHGGIRLPX XXXXXXXXXX  240
XXXXXXXXRR SRRPARGAAA RRRRTSTPPS QPWRVQGRLH ARSHVRRRLE RERQRRHLAV  300
PSRSRRPGSA PWREMGLPRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27221255107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3738040.0AK373804.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3044A21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966213.11e-109PREDICTED: uncharacterized protein LOC101767992 isoform X1
RefseqXP_004966214.11e-109PREDICTED: transcription factor GAMYB isoform X2
TrEMBLW5I4P70.0W5I4P7_WHEAT; Uncharacterized protein
STRINGSi006555m1e-108(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123972632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.13e-57myb domain protein 33
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]